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Scanning Electron Microscopy (SEM)

SEM scans surfaces with electrons to image topography and composition at sub‑nanometer resolution and depth.

What Is Scanning Electron Microscopy (SEM)?

Scanning electron microscopy (SEM) is an analytical technique that produces an image of a sample and other signals by scanning the surface with a high energy beam of electrons. The electron beam interacts with the atoms of the sample to produce many different signals that contain detailed information including the surface topography and chemical composition of the sample.

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Ultra-High Resolution Imaging

Ultra-High Resolution Imaging

Resolves features below 1 nm with excellent depth of field for 3D-like surface views.

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Comprehensive Analysis Modes

Comprehensive
Analysis Modes

Supports topography, elemental composition, crystallography, and 3D reconstruction with advanced detectors.

Flexible Sample Handling

Flexible Sample
Handling

Analyzes diverse solid samples, including thin films, powders, and bulk materials, with conductive preparation options.

Dual beam scanning electron microscope system for high-resolution surface imaging and microanalysis

This schematic describes the major components of a scanning electron microscope.

Why Use SEM?

Our SEM analysis delivers critical insights that accelerate research and development while enhancing quality control through high-resolution imaging to detect and resolve material issues. For time-sensitive projects, Covalent offers rapid turnaround with expedited processing to provide results in as little as 24 hours. Every project is supported with comprehensive reporting, including detailed documentation of measurement conditions and results, ensuring clear and actionable insights. This data empowers informed decision-making, guiding strategic choices in product development and manufacturing processes.

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Accelerated Research and Development

Delivers nanoscale insights that drive innovation and material optimization.

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Improved Quality Control

Identifies defects, contaminants, and compositional issues to enhance product reliability.

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Rapid and Actionable Results

Provides high-quality imaging and elemental analysis with fast turnaround times.

Covalent’s Capabilities Offer SEM for
High‑Resolution Surface Imaging

Covalent Capabilities

Working Principle

SEM provides the user with the ability to see and capture images of the morphology of sample surfaces to visually identify key features and areas of interest.

Equipment Used for SEM:

Thermo Scientific Helios 5 UC DualBeam FIB‑SEM

  • Electron column: Elstar Extreme high-resolution field-emission SEM column with Magnetic immersion lens.
  • Electron beam: Accelerating voltage 350 V–30 kV; resolution 0.6 nm at 15–30 kV and 0.7 nm at 1 kV.
  • Source: High-stability Schottky FEG delivering ~0.8 pA–100 nA probe current.
  • Detectors: In-lens SE/BSE (TLD), ETD SE, optional in-column SE/BSE/MD, DBS, and retractable STEM 3+ BF/DF/HAADF.
  • Stage: High-precision 5-axis motorized stage (up to 150 × 150 mm XY).
View Spec Sheet
Scanning electron microscope components schematic showing electron source, lenses, detectors, and sample stage structure

JEOL JSM‑IT800HL Schottky FEG SEM

  • Electron gun: In-lens Schottky Plus field-emission gun with probe currents up to 300 nA at 30 kV.
  • Electron beam: Landing voltage 0.01–30 kV; resolution 0.7 nm at 20 kV and 1.3 nm at 1 kV.
  • Objective: Hybrid Lens for versatile high-resolution imaging.
  • Detectors: Standard SED and UED; optional SBED and segmented VBED for compositional and topographic contrast.
  • Stage: Full eucentric 5-axis motorized goniometer stage (up to 170 mm-diameter samples).
View Spec Sheet
Scanning electron microscope components schematic showing electron source, lenses, detectors, and sample stage structure

Key Differentiators

  • EDS on multiple tools.
  • EBSD on Helios 5 UC.
  • Low vacuum/environmental mode on Scios.
  • Multiple tools with ultra-high resolution (UHR) immersion final objective lens.
  • Electrostatic final objective lens for magnetic materials on Scios.
  • Air free transfer module compatible with JEOL IT-800HL.
  • 150mm X-Y stage range.
  • 3D reconstruction capability with Thermo Fisher Slice and View feature and Aviso software.

Strengths

  • High spatial resolution.
  • Excellent surface topography and depth of field.
  • Wide range of magnification.
  • Ability to perform elemental/compositional analysis.
  • Multiple imaging modes, flexible sample size and geometry.
  • Rapid imaging capabilities.

Limitations

  • Samples analyzed with SEM are done under a high vacuum environment and therefore must be vacuum stable.
  • Liquids or volatile outgassing materials are not compatible with SEM.
  • Magnetic materials can be analyzed with appropriate caution.
  • Magnetic samples in ultra-high-resolution mode are avoided to avoid damaging the instrument.
Covalent Expert Consultation

Unsure Whether SEM Is Right for You?

We provide industry-leading, high-resolution scanning electron microscopy capabilities that offer superior data essential for understanding and optimizing the quality of your materials.

Sample Information

Typical SEM output is greyscale images with differences in contrast depending on the type of detector. A data bar is also found on the image and usually contains info on the accelerating voltage, SEM detector type, beam current, stage tilt, working distance, magnification, horizontal field width and a scale bar.

  • SE greyscale contrast describes surface topography including brighter contrast at edges and high spots, and darker contrast for regions of shadow, valleys and holes. Good for highlighting different morphologies such as cracks, fibers and textures.
  • BSE greyscale contrast describes composition contrast. Heavier elements with higher Z appear brighter, and lighter elements with lower Z appear darker. Can be used to determine compositional differences and locate different phases or materials.
  • EDS output of data typically involves X-ray spectra, elemental maps or linescans.
  • X-ray spectra are graphs that display X-ray energy on the X axis, and X-ray counts on the Y axis. The peaks in the spectra are matched to the specific X-ray energies of elements and used to determine the chemical composition of the area of interest (weight percent or atomic percent).
  • Elemental maps visually display where in an area of interest specific elements are found. The brightness of the map in a specific area corresponds with how highly concentrated the element is in the AOI. The maps are color coded by element and can be overlaid on top of the SEM image.
  • EDS linescans measure the X-ray EDS data along a single line. The data output is a line graph displaying X-ray count intensity vs position along the line. The different elements are color coded and can be overlaid with each other. The Y axis can be converted to weight percent or atomic percent.
  • EBSD outputs include grain orientation maps, phase identification maps, grain size distribution charts, grain boundary maps.
  • Grain orientation maps are color coded such that certain colors correspond to the crystallographic orientation of a sample grain for a specific crystal system.

If multiple material phases are being measured simultaneously, phase maps provide color coded display of the locations of the different phases in the field of view.

SEM energy dispersive spectroscopy layered map showing battery cathode cross-section with color-coded elemental phases for Ni, O, Co, Fe, F, P, Na, and Al

High resolution, secondary electron image of a grown thin film layer on a metallic substrate. The large depth of field in SEM allows the 3D topography of the thin film layer to be highlighted.

SEM elemental mapping grid visualizing individual distributions of carbon, oxygen, fluorine, sodium, aluminum, phosphorus, iron, cobalt, and nickel in battery cathode sample

Backscattered SEM image of a cross sectioned battery cathode. The BSE contrast reveals high Z inclusions in the center current collector layer, and regions of low Z binder material between the spherical cathode particles.

HAADF-STEM microscopy image displaying AlAs/AlGaAs quantum well interface with oxidation confinement structure highlighted by red annotation

Individual elemental maps and of a cross sectioned battery cathode. The elemental maps reveals that the spherical cathode particles are primarily Ni, O and Co rich. The binder material is primarily C, F, P and Na rich. The center current collector is primarily Al, with Fe inclusions.

Atomic-resolution elemental mapping using EDX at AlAs/AlGaAs interface, showing atomic diffusion with color-coded distribution for aluminum, gallium, and arsenic

Backscattered SEM image of a focus ion beam cross sectioned, multilayered sample through a crack. The BSE contrast reveals material densities of the different layers.

Secondary electron SEM image showing cross‑section microstructure of etched copper sample, highlighting grain boundaries and surface features

Secondary electron image.

EBSD grain orientation map of etched copper cross‑section with colored regions indicating crystallographic orientation of individual copper grains

Electron backscattered diffraction grain orientation map of etched copper cross-section. The different colors on the EBSD map indicate the crystallographic orientation of each measured copper grain.

What we accept:

  • Solid state samples required including thin films on substrates, powder samples, bulk samples.
  • Must be vacuum compatible, no outgassing, volatile samples.
  • Electrically conductive samples. Non-conductive samples will require additional preparation to apply a conductive coating.
  • Samples should be thermally and mechanically stable under vacuum conditions and beam exposure. Need to be mounted to the stage or aluminum stubs with conductive tape or other adhesives.
  • Samples need to be large enough to be easily manipulated with physical tools such as tweezers or powder scoops.
  • Minimum detectable concentration with EDS is 0.1 atomic percent.
  • Samples with significant variations in height may not be compatible especially for SEMs that have a short optimal working distance. This is especially true when FIB milling is also required.
  • Samples requiring FIB milling should generally be flat and the area of interest on the top most surface of the sample. Some exceptions can be made depending on the geometry of the sample.
  • Sample size, shape and weight are important considerations for sample mounting and orientation for SEM analysis and FIB milling. Samples need to be mechanically stable and not drift while the stage is tilted during FIB milling. Specialized sample holders and fixtures may be required for complex samples.

Use Cases

Complementary Techniques

  • Atomic force microscopy measures 3D nanoscale surface topography and mechanical properties. It complements SEM by revealing:
    • Quantitative surface roughness.
    • Mechanical property mapping (e.g., stiffness, adhesion).
    • Useful for nanoscale surface characterization.
  • Auger electron spectroscopy is a surface sensitive elemental analysis technique with high spatial resolution. It complements SEM by:
    • Detecting light elements (e.g., C, N, O) more accurately than EDS.
    • Providing fine-resolution depth profiling.
    • Ideal for interface and failure analysis.
  • Fourier transform infrared spectroscopy detects molecular bonds and chemical structures. It complements SEM by identifying:
    • Organic compounds and polymeric contaminants.
    • Residues not visible to SEM or detectable by EDS.
    • Ideal for contamination and surface residue analysis.
  • Scanning transmission electron microscopy provides atomic scale resolution of internal features using transmitted electrons. It complements SEM by:
    • Revealing grain boundaries, defects and crystallography of nanoscale features and atomic structure that can’t be revealed with SEM.
    • Allowing for nanometer scale resolution elemental mapping with EDS.
    • Allowing for electron energy loss spectroscopy to probe bonding, oxidation states and electronic structure.
    • Useful for atomic detail, composition, and bonding information of internal structures.
  • Transmission electron microscopy provides atomic-resolution imaging and crystallographic detail. It complements SEM by revealing:
    • Internal structure (grain boundaries, dislocations).
    • High-resolution cross-sectional views.
    • Use SEM and TEM together for full microstructure analysis.
  • X-ray photoelectron spectroscopy provides elemental and chemical state information of the top few nanometers of the surface. It complements SEM by:
    • Giving quantitative surface composition.
    • Revealing oxidation states and bonding environments.
    • Ideal for surface chemistry and thin films.

Atomic Force Microscopy (AFM)

Maps nanoscale topography and material properties with a sharp probe. Explore

Auger Electron Spectroscopy (AES)

Measures Auger electrons for high-resolution surface analysis. Explore

Fourier Transform Infrared Spectroscopy (FTIR)

Rapid, non-destructive molecular fingerprinting across materials. Explore

Scanning Transmission Electron Microscopy (STEM)

Provides atomic-scale imaging and spectroscopic mapping. Explore

Transmission Electron Microscopy (TEM)

Images atomic structure, defects, interfaces with sub-nm resolution. Explore

X-ray Photoelectron Spectroscopy (XPS)

Measures surface elemental composition and chemical states. Explore

Why Choose Covalent for Your SEM Needs?

Our clients trust Covalent Metrology for SEM analysis results that exceed their expectations. We provide industry-leading, high-resolution scanning electron microscopy capabilities that offer superior data essential for understanding and optimizing the quality of your materials.

Frequently Asked Questions

Identifying the right test can be complex, but it doesn’t have to be complicated.
Here are some questions we are frequently asked.