Covalent

Seeing the Unseen: A Practical Guide to Electron Microscopy (SEM, TEM and STEM)

SEM, TEM and STEM each answer a different question about a material, and choosing the wrong one costs you time, samples and clarity. Seeing the Unseen is a free eBook that explains how electron microscopy works, when to use each imaging mode, how FIB is used to prepare TEM samples, and which imaging settings make the biggest difference to your results.

Electron microscopy (EM) is a powerful family of imaging techniques used across a wide range of industries and research areas, including semiconductors, electronics, batteries, polymers, metals, biological materials, and advanced manufacturing. By using electrons instead of light, EM reveals structures and defects at the micro- and nanoscale with exceptional detail.

Electron microscopy plays a critical role in process development, failure analysis, and quality control by helping researchers visualize surface topography, material contrast, crystal structure, and nanoscale defects. This eBook introduces the fundamental principles behind electron microscopy and explains how different imaging modes—SEM, TEM, and STEM—are used to answer different types of technical questions.

Readers will also learn how electron signals are generated, how TEM samples are prepared using focused ion beam (FIB) techniques, and how key imaging parameters such as beam energy, probe size, dwell time, and charging affect image quality. This eBook is designed to help you build a practical understanding of electron microscopy and approach future EM projects with greater confidence

SEM, TEM or STEM: which answers your question?

Each electron microscopy mode answers a different question. Picking the wrong one costs time, samples and clarity.

ModeWhat it showsSampleBest for
SEMSurface shape and texture, from mm down to ~1 nm; elements with EDSBulk parts, coated if non-conductiveFractures, particles, coatings, first look in failure analysis
TEMInternal structure, crystal defects, interfaces, layer thicknessThin lamella, typically 20–100 nmThin films, grain boundaries, device cross-sections
STEMAtomic-number contrast plus element maps (EDS, EELS) at each pointSame lamella as TEMLayer chemistry, interfaces, dopant and composition mapping

How TEM samples are made

TEM and STEM need a slice thin enough for electrons to pass through. A focused ion beam (FIB) cuts this lamella from the exact spot you care about, such as one transistor, via or defect. A protective cap and low-energy final polishing keep milling damage away from the area being imaged.

Settings that change your results

The eBook covers the four imaging settings that matter most:

  • Beam energy: how deep the beam reaches into the sample
  • Probe size: the resolution you can actually achieve
  • Dwell time: the trade-off between noise and beam damage
  • Charging: why non-conductive samples smear or drift, and how to stop it

Who it's for

Engineers and scientists in semiconductors, electronics, batteries, polymers and metals who order or interpret electron microscopy for process development, failure analysis or quality control.